You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
(leo) PS C:\Users\BME> morphman-bifurcation --ifile leo\sn.vtp --ofile leo\anglesn.vtp --angle 80 --region-of-interest manual --poly-ball-size 250 250 250
WARNING: Tried to automagically uncapp the input surface. Uncapped 2 inlet/outlets in total. If this number if incorrect please provide an uncapped surface as input, use the clipp_capped_surface method, or vmtksurfaceendclipper.
-- Please select the two relevant outlets in the interactive window.
Quit renderer
-- Region of interest is defined by the region points:
Outlet 1: [104.76170349121094, 129.65249633789062, 123.28350067138672]
Outlet 2: [109.22720336914062, 127.46739959716797, 127.22319793701172]
Cleaning surface.
Triangulating surface.
Computing centerlines.
Computing centerlines...Cleaning surface.
Triangulating surface.
Computing centerlines.
Computing centerlines...Cleaning surface.
Triangulating surface.
Computing centerlines.
Computing centerlines...-- Computing voronoi diagram.
-- Clipping centerlines.
-- Clipping Voronoi diagram
-- Rotating centerlines and voronoi diagram.
C:\Users\BME.conda\envs\leo\Lib\site-packages\numpy_core\fromnumeric.py:3860: RuntimeWarning: Mean of empty slice.
return _methods._mean(a, axis=axis, dtype=dtype,
C:\Users\BME.conda\envs\leo\Lib\site-packages\numpy_core_methods.py:145: RuntimeWarning: invalid value encountered in scalar divide
ret = ret.dtype.type(ret / rcount)
-- Interpolating centerlines.
Traceback (most recent call last):
File "C:\Users\BME.conda\envs\leo\Scripts\morphman-bifurcation-script.py", line 9, in
sys.exit(main_bifurcation())
^^^^^^^^^^^^^^^^^^
File "C:\Users\BME.conda\envs\leo\Lib\site-packages\morphman\manipulate_bifurcation.py", line 654, in main_bifurcation
manipulate_bifurcation(**read_command_line_bifurcation())
File "C:\Users\BME.conda\envs\leo\Lib\site-packages\morphman\manipulate_bifurcation.py", line 174, in manipulate_bifurcation
interpolated_cl = interpolate_patch_centerlines(rotated_cl, centerline_par,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\BME.conda\envs\leo\Lib\site-packages\morphman\common\vessel_reconstruction_tools.py", line 222, in interpolate_patch_centerlines
splinePoints = interpolate_spline(startingCell, endingCell, additionalPoint)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\BME.conda\envs\leo\Lib\site-packages\morphman\common\vessel_reconstruction_tools.py", line 277, in interpolate_spline
points.append(get_startCell.GetPoint(num_start - n * i - 1))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: expects 0 <= id && id < GetNumberOfPoints()
How I solve this error?
The text was updated successfully, but these errors were encountered:
(leo) PS C:\Users\BME> morphman-bifurcation --ifile leo\sn.vtp --ofile leo\anglesn.vtp --angle 80 --region-of-interest manual --poly-ball-size 250 250 250
WARNING: Tried to automagically uncapp the input surface. Uncapped 2 inlet/outlets in total. If this number if incorrect please provide an uncapped surface as input, use the clipp_capped_surface method, or vmtksurfaceendclipper.
-- Please select the two relevant outlets in the interactive window.
Quit renderer
-- Region of interest is defined by the region points:
Outlet 1: [104.76170349121094, 129.65249633789062, 123.28350067138672]
Outlet 2: [109.22720336914062, 127.46739959716797, 127.22319793701172]
Cleaning surface.
Triangulating surface.
Computing centerlines.
Computing centerlines...Cleaning surface.
Triangulating surface.
Computing centerlines.
Computing centerlines...Cleaning surface.
Triangulating surface.
Computing centerlines.
Computing centerlines...-- Computing voronoi diagram.
-- Clipping centerlines.
-- Clipping Voronoi diagram
-- Rotating centerlines and voronoi diagram.
C:\Users\BME.conda\envs\leo\Lib\site-packages\numpy_core\fromnumeric.py:3860: RuntimeWarning: Mean of empty slice.
return _methods._mean(a, axis=axis, dtype=dtype,
C:\Users\BME.conda\envs\leo\Lib\site-packages\numpy_core_methods.py:145: RuntimeWarning: invalid value encountered in scalar divide
ret = ret.dtype.type(ret / rcount)
-- Interpolating centerlines.
Traceback (most recent call last):
File "C:\Users\BME.conda\envs\leo\Scripts\morphman-bifurcation-script.py", line 9, in
sys.exit(main_bifurcation())
^^^^^^^^^^^^^^^^^^
File "C:\Users\BME.conda\envs\leo\Lib\site-packages\morphman\manipulate_bifurcation.py", line 654, in main_bifurcation
manipulate_bifurcation(**read_command_line_bifurcation())
File "C:\Users\BME.conda\envs\leo\Lib\site-packages\morphman\manipulate_bifurcation.py", line 174, in manipulate_bifurcation
interpolated_cl = interpolate_patch_centerlines(rotated_cl, centerline_par,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\BME.conda\envs\leo\Lib\site-packages\morphman\common\vessel_reconstruction_tools.py", line 222, in interpolate_patch_centerlines
splinePoints = interpolate_spline(startingCell, endingCell, additionalPoint)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\BME.conda\envs\leo\Lib\site-packages\morphman\common\vessel_reconstruction_tools.py", line 277, in interpolate_spline
points.append(get_startCell.GetPoint(num_start - n * i - 1))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: expects 0 <= id && id < GetNumberOfPoints()
How I solve this error?
The text was updated successfully, but these errors were encountered: