adds coverage to action

Author: JBGruber

.Rbuildignore

@@ -13,3 +13,4 @@
 ^CRAN-SUBMISSION$
 ^docker-compose.yml$
 ^paper$
+^codecov\.yml$

.github/workflows/R-CMD-check.yaml

@@ -39,6 +39,13 @@ jobs:
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
+        # run Ollama Docker image
+      - name: Start Docker Container
+        if: matrix.config.os == 'ubuntu-latest'
+        run: |
+          docker pull ollama/ollama:latest
+          docker run -d --name ollama -p 11434:11434 ollama/ollama:latest
+
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           extra-packages: any::rcmdcheck
@@ -47,3 +54,29 @@ jobs:
       - uses: r-lib/actions/check-r-package@v2
         with:
           upload-snapshots: true
+
+
+      - name: Test coverage
+        if: matrix.config.os == 'ubuntu-latest'
+        run: |
+          covr::codecov(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
+          )
+        shell: Rscript {0}
+
+      - name: Show testthat output
+        if: matrix.config.os == 'ubuntu-latest'
+        run: |
+          ## --------------------------------------------------------------------
+          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v3
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package
+

R/utils.r

@@ -101,9 +101,9 @@ make_req <- function(req_data, server, endpoint, perform = TRUE) {
 get_headers <- function() {
   agent <- the$agent
   if (is.null(agent)) {
-    sess <- sessionInfo()
+    sess <- utils::sessionInfo()
     the$agent <- agent <- paste0(
-      "rollama/", packageVersion("rollama"),
+      "rollama/", utils::packageVersion("rollama"),
       "(", sess$platform, ") ",
       sess$R.version$version.string
     )

codecov.yml

@@ -0,0 +1,14 @@
+comment: false
+
+coverage:
+  status:
+    project:
+      default:
+        target: auto
+        threshold: 1%
+        informational: true
+    patch:
+      default:
+        target: auto
+        threshold: 1%
+        informational: true