Merge pull request #611 from GenSpectrum/559-nextstrain-clade-for-sars-cov-2

feat(website): add 'Sub-lineages Neststrain Clade' for Sars-Cov-2

Author: fengelniederhammer

website/src/pages/covid/single-variant.astro

@@ -127,12 +127,19 @@ const organismConfig = getDashboardsConfig().dashboards.organisms;
                 pageSize={10}
             />
             <GsAggregate
-                title='Sub-lineages'
+                title='Nextclade pango lineage'
                 fields={getLineageFilterFields(view.organismConstants.lineageFilters)}
                 lapisFilter={variantFilter}
                 views={[views.table, views.bar]}
                 pageSize={10}
             />
+            <GsAggregate
+                title='Nextstrain Clade'
+                fields={getLineageFilterFields(view.organismConstants.nextstrainCladeLineageFilters)}
+                lapisFilter={variantFilter}
+                views={[views.table, views.bar]}
+                pageSize={10}
+            />
             {
                 subdivisionField !== undefined && (
                     <GsAggregate

website/src/views/covid.ts

@@ -45,6 +45,15 @@ class CovidConstants implements OrganismConstants {
             initialValue: undefined,
         },
     ];
+    // Same as `lineageFilters` but for Nextstrain Clade, used for 'Sub-lineages Nextstrain Clade'
+    public readonly nextstrainCladeLineageFilters: LineageFilterConfig[] = [
+        {
+            lapisField: 'nextstrainClade',
+            placeholderText: 'Nextstrain clade',
+            filterType: 'lineage' as const,
+            initialValue: undefined,
+        },
+    ];
     public readonly useAdvancedQuery = true;
     public readonly baselineFilterConfigs: BaselineFilterConfig[] = [
         {