feat(lapis): add fields property to mutation endpoints

[fengelniederhammer]

If fields is not empty, then the response will only contain the fields that were specified there.

resolves #1092

PR Checklist

• All necessary documentation has been adapted.
• The implemented feature is covered by an appropriate test.

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Name	Status	Preview	Comments	Updated (UTC)
lapis	✅ Ready (Inspect)	Visit Preview	💬 Add feedback	Apr 9, 2025 2:12pm

[Copilot]

Copilot reviewed 3 out of 21 changed files in this pull request and generated no comments.

Files not reviewed (18)

• lapis/src/main/kotlin/org/genspectrum/lapis/controller/ControllerDescriptions.kt: Language not supported
• lapis/src/main/kotlin/org/genspectrum/lapis/controller/LapisController.kt: Language not supported
• lapis/src/main/kotlin/org/genspectrum/lapis/model/SiloQueryModel.kt: Language not supported
• lapis/src/main/kotlin/org/genspectrum/lapis/openApi/OpenApiDocs.kt: Language not supported
• lapis/src/main/kotlin/org/genspectrum/lapis/openApi/Schemas.kt: Language not supported
• lapis/src/main/kotlin/org/genspectrum/lapis/request/Field.kt: Language not supported
• lapis/src/main/kotlin/org/genspectrum/lapis/request/MutationProportionsRequest.kt: Language not supported
• lapis/src/main/kotlin/org/genspectrum/lapis/request/SequenceFiltersRequestWithFields.kt: Language not supported
• lapis/src/main/kotlin/org/genspectrum/lapis/response/LapisResponse.kt: Language not supported
• lapis/src/main/kotlin/org/genspectrum/lapis/response/ResponseCollections.kt: Language not supported
• lapis/src/main/kotlin/org/genspectrum/lapis/response/SiloResponse.kt: Language not supported
• lapis/src/main/kotlin/org/genspectrum/lapis/silo/SiloQuery.kt: Language not supported
• lapis/src/test/kotlin/org/genspectrum/lapis/controller/Helpers.kt: Language not supported
• lapis/src/test/kotlin/org/genspectrum/lapis/controller/LapisControllerDataFormatTest.kt: Language not supported
• lapis/src/test/kotlin/org/genspectrum/lapis/controller/LapisControllerTest.kt: Language not supported
• lapis/src/test/kotlin/org/genspectrum/lapis/controller/MockData.kt: Language not supported
• lapis/src/test/kotlin/org/genspectrum/lapis/model/SiloQueryModelTest.kt: Language not supported
• lapis/src/test/kotlin/org/genspectrum/lapis/request/MutationProportionsRequestTest.kt: Language not supported

Comments suppressed due to low confidence (2)

lapis-e2e/test/nucleotideMutations.spec.ts:32

• [nitpick] Consider clarifying the test description to emphasize that only the specified field is returned. For example, use something like 'should return only the specified mutation field when using fields filter'.

it('should return only mutation when asking for only mutation', async () => {

lapis-e2e/test/aminoAcidMutations.spec.ts:32

• [nitpick] Consider clarifying the test description to better indicate that only the specified mutation field is returned when the fields filter is applied. A more descriptive message can improve clarity.

it('should return only mutation when asking for only mutation', async () => {

[github-actions]

This is a preview of the changelog of the next release. If this branch is not up-to-date with the current main branch, the changelog may not be accurate. Rebase your branch on the main branch to get the most accurate changelog.

Note that this might contain changes that are on main, but not yet released.

Changelog:

0.4.3 (2025-04-09)

Features

• lapis: add fields property to mutation endpoints (1b59de8), closes #1092

[JonasKellerer]

Great work. Only some minor refactoring and one unit test case left.