fixed addTaxon replacing pipe

Author: trvinh

fdog/addTaxon.py

@@ -84,7 +84,7 @@ def runBlast(args):
         os.symlink(fileInGenome, fileInBlast)
 
 def main():
-    version = '0.0.10'
+    version = '0.0.11'
     parser = argparse.ArgumentParser(description='You are running fdog.addTaxon version ' + str(version) + '.')
     required = parser.add_argument_group('required arguments')
     optional = parser.add_argument_group('optional arguments')
@@ -165,7 +165,7 @@ def main():
             if ' ' in id:
                 sys.exit('\033[91mERROR: Sequence IDs (e.g. %s) must not contain space(s)!\033[0m' % id)
             else:
-                if '\|' in id:
+                if '|' in id:
                     print('\033[91mWARNING: Sequence IDs contain pipe(s). They will be replaced by "_"!\033[0m')
                     id = re.sub('\|', '_', id)
             # if len(id) > 20:

fdog/runMulti.py

@@ -221,7 +221,7 @@ def createConfigPP(outpath, jobName, refspec):
         yaml.dump(settings, configfile, default_flow_style = False)
 
 def main():
-    version = '0.0.52'
+    version = '0.0.53'
     parser = argparse.ArgumentParser(description='You are running fdogs.run version ' + str(version) + '.')
     parser.add_argument('--version', action='version', version=str(version))
     required = parser.add_argument_group('Required arguments')

fdog/runSingle.py

@@ -199,7 +199,7 @@ def getTaxName(taxId):
     return(name)
 
 def main():
-    version = '0.0.52'
+    version = '0.0.53'
     parser = argparse.ArgumentParser(description='You are running fdog.run version ' + str(version) + '.')
     parser.add_argument('--version', action='version', version=str(version))
     required = parser.add_argument_group('Required arguments')

setup.py

@@ -26,7 +26,7 @@
 
 setup(
     name="fdog",
-    version="0.0.52",
+    version="0.0.53",
 
     python_requires='>=3.7.0',
     description="Feature-aware Directed OrtholoG search tool",