Merge pull request #11 from BIONF/dev

fix sparse sampling step in runs

Author: aromberg

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "XspecT"
-version = "0.2.4"
+version = "0.2.5"
 description = "Tool to monitor and characterize pathogens using Bloom filters."
 readme = {file = "README.md", content-type = "text/markdown"}
 license = {file = "LICENSE"}

src/xspect/models/probabilistic_filter_svm_model.py

@@ -107,7 +107,7 @@ def predict(
         ),
         filter_ids: list[str] = None,
         step: int = 1,
-    ) -> dict:
+    ) -> ModelResult:
         """Predict the labels of the sequences"""
         # get scores and format them for the SVM
         res = super().predict(sequence_input, filter_ids, step=step)
@@ -119,6 +119,7 @@ def predict(
             self.slug(),
             res.hits,
             res.num_kmers,
+            sparse_sampling_step=step,
             prediction=str(svm.predict(svm_scores)[0]),
         )