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Calculate RPKM automatically

enhancement

Status: Open.

#27 In shenlab-sinai/SPEctRA;

· ipurusho opened on Oct 30, 2015

LSF branch not run

bug

Status: Open.

#23 In shenlab-sinai/SPEctRA;

· lishen opened on Aug 20, 2014

Code readability enhancement

enhancement

Status: Open.

#22 In shenlab-sinai/SPEctRA;

· lishen opened on Feb 27, 2014

Syntax error in dictionary key finder method

bug

Status: Open.

#21 In shenlab-sinai/SPEctRA;

· ipurusho opened on Jan 16, 2014

Folders denote run number

Feature

Status: Open.

#18 In shenlab-sinai/SPEctRA;

· ipurusho opened on Jan 14, 2014

Allow multiple fastq directory input

Feature

Status: Open.

#17 In shenlab-sinai/SPEctRA;

· ipurusho opened on Jan 14, 2014

Strand option for tophat not working properly

bug

Status: Open.

#16 In shenlab-sinai/SPEctRA;

· ipurusho opened on Dec 31, 2013

STAR sam file manipulation

Intermediate Step

Status: Open.

#12 In shenlab-sinai/SPEctRA;

· ipurusho opened on Dec 6, 2013

· 

Phase 1: Alignment and QC

Enable ISA tab compatibility

General

Status: Open.

#11 In shenlab-sinai/SPEctRA;

· ipurusho opened on Dec 5, 2013

Allow multiple methods to count reads

Read count

Status: Open.

#10 In shenlab-sinai/SPEctRA;

· ipurusho opened on Dec 5, 2013

Automated Reporting

Status: Open.

#9 In shenlab-sinai/SPEctRA;

· ipurusho opened on Dec 5, 2013

Flexible execution of pipeline

General

Status: Open.

#8 In shenlab-sinai/SPEctRA;

· ipurusho opened on Dec 5, 2013

· 

Phase 1: Alignment and QC