diff --git a/joss.03888/10.21105.joss.03888.crossref.xml b/joss.03888/10.21105.joss.03888.crossref.xml new file mode 100644 index 0000000000..e7a967868b --- /dev/null +++ b/joss.03888/10.21105.joss.03888.crossref.xml @@ -0,0 +1,424 @@ + + + + 20220315T101051-541be1463ed07bb8118dc43a907810dbc74c0414 + 20220315101051 + + JOSS Admin + admin@theoj.org + + The Open Journal + + + + + Journal of Open Source Software + JOSS + 2475-9066 + + 10.21105/joss + https://joss.theoj.org/ + + + + + 03 + 2022 + + + 7 + + 71 + + + + mmrefpoints: Projecting long-term marine mammal +abundance with bycatch + + + + Margaret C. + Siple + https://orcid.org/0000-0002-4260-9856 + + + André E. + Punt + https://orcid.org/0000-0001-8489-2488 + + + Tessa B. + Francis + https://orcid.org/0000-0002-3383-5392 + + + Philip S. + Hammond + https://orcid.org/0000-0002-2381-8302 + + + Dennis + Heinemann + https://orcid.org/0000-0002-1434-2445 + + + Kristy J. + Long + https://orcid.org/0000-0001-6970-0935 + + + Jeffrey + Moore + https://orcid.org/0000-0003-3715-7442 + + + Maritza + Sepúlveda + https://orcid.org/0000-0002-1403-176X + + + Randall R. + Reeves + https://orcid.org/0000-0002-6512-6507 + + + Guðjón Már + Sigurðsson + https://orcid.org/0000-0001-9390-6693 + + + Gísli + Víkingsson + https://orcid.org/0000-0002-4501-193X + + + Paul R. + Wade + https://orcid.org/0000-0003-2428-9323 + + + Rob + Williams + https://orcid.org/0000-0001-7496-453X + + + Alexandre N. + Zerbini + https://orcid.org/0000-0002-9776-6605 + + + + 03 + 11 + 2022 + + + 3888 + + + 10.21105/joss.03888 + + + http://creativecommons.org/licenses/by/4.0/ + http://creativecommons.org/licenses/by/4.0/ + http://creativecommons.org/licenses/by/4.0/ + + + + Software archive + 10.5281/zenodo.6338110 + + + GitHub review issue + https://github.com/openjournals/joss-reviews/issues/3888 + + + + 10.21105/joss.03888 + https://joss.theoj.org/papers/10.21105/joss.03888 + + + https://joss.theoj.org/papers/10.21105/joss.03888.pdf + + + + + + Calculating Limits to the Allowable +Human-Caused Mortality of Cetaceans and Pinnipeds + Wade + Marine Mammal Science + 1 + 14 + 10.1111/j.1748-7692.1998.tb00688.x + 1748-7692 + 1998 + Wade, P. R. (1998). Calculating +Limits to the Allowable Human-Caused Mortality of Cetaceans and +Pinnipeds. Marine Mammal Science, 14(1), 1–37. +https://doi.org/10.1111/j.1748-7692.1998.tb00688.x + + + Annex R: A full description of the standard +Baleen II model and some variants thereof + Punt + 1999 + Punt, A. E. (1999). Annex R: A full +description of the standard Baleen II model and some variants thereof. +Division of Marine Research, CSIRO Marine Laboratories. +https://duwamish.lib.washington.edu/uwnetid/illiad.dll?Action=10&Form=75&Value=1651729 + + + Age- and sex-specific survival of California +sea lions (Zalophus californianus) at San Miguel Island, +California + DeLong + Marine Mammal Science + 4 + 33 + 10.1111/mms.12427 + 1748-7692 + 2017 + DeLong, R. L., Melin, S. R., Laake, +J. L., Morris, P., Orr, A. J., & Harris, J. D. (2017). Age- and +sex-specific survival of California sea lions (Zalophus californianus) +at San Miguel Island, California. Marine Mammal Science, 33(4), +1097–1125. https://doi.org/10.1111/mms.12427 + + + Sex- and age-specific survival of harbor +seals (Phoca vitulina) from Tugidak Island, Alaska + Hastings + Journal of Mammalogy + 5 + 93 + 10.1644/11-MAMM-A-291.1 + 0022-2372 + 2012 + Hastings, K. K., Small, R. J., & +Pendleton, G. W. (2012). Sex- and age-specific survival of harbor seals +(Phoca vitulina) from Tugidak Island, Alaska. Journal of Mammalogy, +93(5), 1368–1379. +https://doi.org/10.1644/11-MAMM-A-291.1 + + + Conserving and recovering vulnerable marine +species: A comprehensive evaluation of the US approach for marine +mammals + Punt + ICES Journal of Marine +Science + 5 + 75 + 10.1093/icesjms/fsy049 + 1054-3139 + 2018 + Punt, A. E., Moreno, P., Brandon, J. +R., & Mathews, M. A. (2018). Conserving and recovering vulnerable +marine species: A comprehensive evaluation of the US approach for marine +mammals. ICES Journal of Marine Science, 75(5), 1813–1831. +https://doi.org/10.1093/icesjms/fsy049 + + + Population Dynamics of Western Arctic Bowhead +Whales ( Balaena mysticetus ) + Breiwick + Canadian Journal of Fisheries and Aquatic +Sciences + 3 + 41 + 10.1139/f84-058 + 0706-652X + 1984 + Breiwick, J. M., Eberhardt, L. L., +& Braham, H. W. (1984). Population Dynamics of Western Arctic +Bowhead Whales ( Balaena mysticetus ). Canadian Journal of Fisheries and +Aquatic Sciences, 41(3), 484–496. +https://doi.org/10.1139/f84-058 + + + The effects of future consumption by the Cape +fur seal on catches and catch rates of the Cape hakes. 3. Modelling the +dynamics of the Cape fur seal Arctocephalus pusillus +pusillus + Butterworth + South African Journal of Marine +Science + 1 + 16 + 10.2989/025776195784156511 + 0257-7615 + 1995 + Butterworth, D. S., Punt, A. E., +Oosthuizen, W. H., & Wickens, P. A. (1995). The effects of future +consumption by the Cape fur seal on catches and catch rates of the Cape +hakes. 3. Modelling the dynamics of the Cape fur seal Arctocephalus +pusillus pusillus. South African Journal of Marine Science, 16(1), +161–183. +https://doi.org/10.2989/025776195784156511 + + + Improved estimation of intrinsic growth rmax +for long-lived species: Integrating matrix models and +allometry + Dillingham + Ecological Applications + 1 + 26 + 10.1890/14-1990 + 1939-5582 + 2016 + Dillingham, P. W., Moore, J. E., +Fletcher, D., Cortés, E., Curtis, K. A., James, K. C., & Lewison, R. +L. (2016). Improved estimation of intrinsic growth rmax for long-lived +species: Integrating matrix models and allometry. Ecological +Applications, 26(1), 322–333. +https://doi.org/10.1890/14-1990 + + + Variations in age- and sex-specific survival +rates help explain population trend in a discrete marine mammal +population + Arso Civil + Ecology and Evolution + 1 + 9 + 10.1002/ece3.4772 + 20457758 + 2019 + Arso Civil, M., Cheney, B., Quick, N. +J., Islas-Villanueva, V., Graves, J. A., Janik, V. M., Thompson, P. M., +& Hammond, P. S. (2019). Variations in age- and sex-specific +survival rates help explain population trend in a discrete marine mammal +population. Ecology and Evolution, 9(1), 533–544. +https://doi.org/10.1002/ece3.4772 + + + Growth and reproduction in harbour porpoises +(Phocoena phocoena) in Icelandic waters + Ólafsdóttir + NAMMCO Scientific +Publications + 5 + 10.7557/3.2747 + 2309-2491 + 2003 + Ólafsdóttir, D., Víkingsson, G. A., +Halldórsson, S. D., & Sigurjónsson, J. (2003). Growth and +reproduction in harbour porpoises (Phocoena phocoena) in Icelandic +waters. NAMMCO Scientific Publications, 5, 195–210. +https://doi.org/10.7557/3.2747 + + + Mark-recapture estimates of seasonal +abundance and survivorship for bottlenose dolphins (Tursiops truncatus) +near Charleston, South Carolina, USA + Speakman + 2010 + Speakman, T. R., Lane, S. M., +Schwacke, L. H., Fair, P. A., & Zolman, E. S. (2010). Mark-recapture +estimates of seasonal abundance and survivorship for bottlenose dolphins +(Tursiops truncatus) near Charleston, South Carolina, USA. +11. + + + Unpublished estimates following the methods +of Dillingham et al. 2016. + Moore + 2019 + Moore, J. E. (2019). Unpublished +estimates following the methods of Dillingham et al. +2016. + + + Best Practices for Assessing and Managing +Bycatch of Marine Mammals + Wade + Frontiers in Marine Science + 8 + 10.3389/fmars.2021.757330 + 2296-7745 + 2021 + Wade, P. R., Long, K. J., Francis, T. +B., Punt, A. E., Hammond, P. S., Heinemann, D., Moore, J. E., Reeves, R. +R., Sepúlveda, M., Sullaway, G., Sigurðsson, G. M., Siple, M. C., +Víkingsson, G. A., Williams, R., & Zerbini, A. N. (2021). Best +Practices for Assessing and Managing Bycatch of Marine Mammals. +Frontiers in Marine Science, 8, 1566. +https://doi.org/10.3389/fmars.2021.757330 + + + Estimating Bycatch Mortality for Marine +Mammals: Concepts and Best Practices + Moore + Frontiers in Marine Science + 8 + 10.3389/fmars.2021.752356 + 2296-7745 + 2021 + Moore, J. E., Heinemann, D., Francis, +T. B., Hammond, P. S., Long, K. J., Punt, A. E., Reeves, R. R., +Sepúlveda, M., Sigurðsson, G. M., Siple, M. C., Víkingsson, G. A., Wade, +P. R., Williams, R., & Zerbini, A. N. (2021). Estimating Bycatch +Mortality for Marine Mammals: Concepts and Best Practices. Frontiers in +Marine Science, 8, 1793. +https://doi.org/10.3389/fmars.2021.752356 + + + Estimating the Abundance of Marine Mammal +Populations + Hammond + Frontiers in Marine Science + 8 + 10.3389/fmars.2021.735770 + 2296-7745 + 2021 + Hammond, P. S., Francis, T. B., +Heinemann, D., Long, K. J., Moore, J. E., Punt, A. E., Reeves, R. R., +Sepúlveda, M., Sigurðsson, G. M., Siple, M. C., Víkingsson, G., Wade, P. +R., Williams, R., & Zerbini, A. N. (2021). Estimating the Abundance +of Marine Mammal Populations. Frontiers in Marine Science, 8, 1316. +https://doi.org/10.3389/fmars.2021.735770 + + + R: A language and environment for statistical +computing + R Core Team + 2021 + R Core Team. (2021). R: A language +and environment for statistical computing. R Foundation for Statistical +Computing. https://www.R-project.org/ + + + Shiny: Web application framework for +R + Chang + 2021 + Chang, W., Cheng, J., Allaire, J., +Sievert, C., Schloerke, B., Xie, Y., Allen, J., McPherson, J., Dipert, +A., & Borges, B. (2021). Shiny: Web application framework for R. +https://CRAN.R-project.org/package=shiny + + + + + + diff --git a/joss.03888/10.21105.joss.03888.jats b/joss.03888/10.21105.joss.03888.jats new file mode 100644 index 0000000000..71945b901b --- /dev/null +++ b/joss.03888/10.21105.joss.03888.jats @@ -0,0 +1,755 @@ + + +
+ + + + +Journal of Open Source Software +JOSS + +2475-9066 + +Open Journals + + + +3888 +10.21105/joss.03888 + +mmrefpoints: Projecting long-term marine mammal abundance +with bycatch + + + +0000-0002-4260-9856 + +Siple +Margaret C. + + + + +0000-0001-8489-2488 + +Punt +André E. + + + + +0000-0002-3383-5392 + +Francis +Tessa B. + + + + +0000-0002-2381-8302 + +Hammond +Philip S. + + + + +0000-0002-1434-2445 + +Heinemann +Dennis + + + + +0000-0001-6970-0935 + +Long +Kristy J. + + + + +0000-0003-3715-7442 + +Moore +Jeffrey + + + + +0000-0002-1403-176X + +Sepúlveda +Maritza + + + + +0000-0002-6512-6507 + +Reeves +Randall R. + + + + +0000-0001-9390-6693 + +Sigurðsson +Guðjón Már + + + + +0000-0002-4501-193X + +Víkingsson +Gísli + + + + +0000-0003-2428-9323 + +Wade +Paul R. + + + + +0000-0001-7496-453X + +Williams +Rob + + + + +0000-0002-9776-6605 + +Zerbini +Alexandre N. + + + + + +Resource Assessment and Conservation Engineering Division, +Alaska Fisheries Science Center, National Oceanic and Atmospheric +Administration, Seattle, WA, 98115, USA + + + + +School of Aquatic and Fishery Sciences, University of +Washington, 1122 NE Boat St, Seattle, WA 98115 + + + + +Puget Sound Institute, University of Washington Tacoma, 326 +East D Street, Tacoma, WA 98421, USA + + + + +Sea Mammal Research Unit, Scottish Oceans Institute, +University of St Andrews, Fife KY16 8LB, UK + + + + +U.S. Marine Mammal Commission, 4340 East-West Hwy, Rm 700, +Bethesda, MD 20814, USA + + + + +Office of Protected Resources, NOAA’s National Marine +Fisheries Service, Silver Spring, MD 20910, USA + + + + +Protected Resources Division, NOAA SWFSC, La Jolla, CA +92037, USA + + + + +Facultad de Ciencias, Universidad de Valparaíso, Gran +Bretaña 1111, Playa Ancha, Valparaíso, Chile + + + + +Okapi Wildlife Associates, Hudson, Quebec, +Canada + + + + +Marine and Freshwater Research Institute, Skúlagata 4, 121, +Reykjavík, Iceland + + + + +Marine Mammal Laboratory, NOAA AFSC, Seattle, WA, +98115-6349, USA + + + + +Oceans Initiative, 117 E. Louisa Street No. 135. Seattle, +WA 98102, USA + + + + +Cascadia Research Collective, 218 ½ 4th Ave W, Olympia, WA, +98501, USA + + + + +Marine Ecology and Telemetry Research, 2468 Camp McKenzie +Tr NW, Seabeck, WA, 98380, USA + + + + +8 +3 +2022 + +7 +71 +3888 + +Authors of papers retain copyright and release the +work under a Creative Commons Attribution 4.0 International License (CC +BY 4.0) +2022 +The article authors + +Authors of papers retain copyright and release the work under +a Creative Commons Attribution 4.0 International License (CC BY +4.0) + + + +Shiny +R +marine mammal bycatch + + + + + + Statement of Need +

Fisheries bycatch is one of the top threats to marine mammals + worldwide. Data on bycatch and marine mammal abundance are required to + make management decisions, yet many marine mammal populations exist in + locations where these data are sparse. Population models offer a way + to explore the long-term impacts of different bycatch scenarios even + when data are sparse or absent. Our modeling tool, + mmrefpoints, uses very basic information about + marine mammal life history, estimates of abundance and bycatch, and + population models to project long-term (e.g., 20-100 yr) outcomes of + different bycatch rates. These long-term outcomes are the basis of + several reference points used for marine mammal management including + the Potential Biological Removal (PBR) approach + (Wade, + 1998). The goal is to make complex population models accessible + to managers and stakeholders who need them, and to students who are + learning about risk-based approaches to managing marine mammal + populations.

+ + + Summary +

This tool provides a way for managers and other stakeholders to + explore bycatch scenarios, based on simple information about marine + mammal life history and rough estimates of abundance and bycatch. The + tool consists of an R package + (R Core + Team, 2021) and a Shiny application + (Chang + et al., 2021). The primary machinery in the package is an + age-structured population dynamics model, which is used to model + future population size based on the current population size, life + history traits, and bycatch rates. The package also contains tools for + calculating performance metrics, as well as the U.S. reference point + for bycatch (Potential Biological Removal or PBR) and a solver that + estimates the maximum bycatch rate that will meet management + objectives. For users who would prefer to see outputs in an + interactive user interface, there is a Shiny app called the Marine + Mammal Bycatch Impacts Exploration Tool (MMBIET) that shows + projections, explains and calculates reference points, and creates a + report summarizing inputs and outputs. The app is hosted publicly on + the web via the + shinyapps.io + server, or it can be run locally by installing the package + and running the run_app() function in the R or + RStudio console:

+ remotes::install_github("mcsiple/mmrefpoints") +library(mmrefpoints) +run_app() + + + Population model +

The population model is a simplified version of the model described + by Breiwick et al. + (1984) + and Punt + (1999). + The model is a single-sex, age-structured population model. The number + of calves or pups born each year is density-dependent, based on the + number of mature adults, the pregnancy rate at pre-exploitation + equilibrium, maximum theoretical fecundity rate, degree of + compensation, and the total abundance relative to carrying capacity K. + User inputs determine the parameters for calf survival, adult + survival, age at maturity, and plus group age. Default parameters are + based on those used by Punt et al. + (2018), + with additional default parameters for other species drawn from + literature values + (Arso + Civil et al., 2019; + Ólafsdóttir + et al., 2003; + Speakman + et al., 2010). Because of the variation in pinniped life + history parameters, parameter estimates for several pinniped species + are provided within the Shiny app. These life history parameters are + taken from Butterworth et al. + (1995), + DeLong et al. + (2017), + Dillingham et al. + (2016), + Hastings et al. + (2012), + and J. E. Moore + (2019).

+

The full model description including equations is contained in the + “Model description” vignette and the “About the Model” tab of the + app.

+ + + Intended use + + <monospace>mmrefpoints</monospace> and the MMBIET app are + intended to be used for the following: + + +

Exploring outcomes for bycatch rates in populations with + little or no information

+ + +

Calculating reference points like PBR to estimate maximum + allowable bycatch for marine mammal populations

+ + + + + The MMBIET app is <italic>not</italic> intended for the + following: + + +

Permitting specific management actions regarding bycatch. We + refer users to Hammond et al. + (2021), + Jeffrey E. Moore et al. + (2021), + and Wade et al. + (2021) + for guidance on developing a management program for marine + mammal bycatch including monitoring.

+ + +

Calculating PBR for marine mammal stocks that already have a + stock assessment. If reference points have already been + calculated for the stock, those should be used.

+ + +

Fitting population models to data (we direct readers to other + tools like + rSPAMM + for this type of need)

+ + + + + + Acknowledgements +

The authors would like to thank several pilot testers for reviewing + a beta version of the MMBIET Shiny app, and Christine Stawitz and Jay + Barlow for reviewing an earlier version of the + mmrefpoints R package and the app.

+ + + Ongoing projects using MMBIET +

At the time of this submission, three papers have cited + mmrefpoints and/or MMBIET:

+

Hammond, P. S., Francis, T. B., Heinemann, D., Long, K. J., Moore, + J. E., Punt, A. E., Reeves, R. R., Sepúlveda, M., Sigurðsson, G. M., + Siple, M. C., Víkingsson, G., Wade, P. R., Williams, R., & + Zerbini, A. N. (2021). Estimating the Abundance of Marine Mammal + Populations. Frontiers in Marine Science, 8, 1316. + https://doi.org/10.3389/fmars.2021.735770

+

Moore, J. E., Heinemann, D., Francis, T. B., Hammond, P. S., Long, + K. J., Punt, A. E., Reeves, R. R., Sepúlveda, M., Sigurðsson, G. M., + Siple, M. C., Víkingsson, G. A., Wade, P. R., Williams, R., & + Zerbini, A. N. (2021). Estimating Bycatch Mortality for Marine + Mammals: Concepts and Best Practices. Frontiers in Marine Science, 8, + 1793. + https://doi.org/10.3389/fmars.2021.752356

+

Wade, P. R., Long, K. J., Francis, T. B., Punt, A. E., Hammond, P. + S., Heinemann, D., Moore, J. E., Reeves, R. R., Sepúlveda, M., + Sullaway, G., Sigurðsson, G. M., Siple, M. C., Víkingsson, G. A., + Williams, R., & Zerbini, A. N. (2021). Best Practices for + Assessing and Managing Bycatch of Marine Mammals. Frontiers in Marine + Science, 8, 1566. + https://doi.org/10.3389/fmars.2021.757330

+ + + Financial support +

Support for this project is provided by the Ocean Modeling Forum + and the Lenfest Ocean Program. M. Siple was supported by the Ocean + Modeling Forum and a James S. McDonnell Postdoctoral Fellowship.

+ + + + + + + + + WadePaul R. + + Calculating Limits to the Allowable Human-Caused Mortality of Cetaceans and Pinnipeds + Marine Mammal Science + 1998 + 14 + 1 + 1748-7692 + https://onlinelibrary-wiley-com.offcampus.lib.washington.edu/doi/abs/10.1111/j.1748-7692.1998.tb00688.x + 10.1111/j.1748-7692.1998.tb00688.x + + + + + + PuntA. E. + + Annex R: A full description of the standard Baleen II model and some variants thereof + Division of Marine Research, CSIRO Marine Laboratories + Hobart, Australia + 1999 + 20180807 + https://duwamish.lib.washington.edu/uwnetid/illiad.dll?Action=10&Form=75&Value=1651729 + + + + + + DeLongRobert L. + MelinSharon R. + LaakeJeffrey L. + MorrisPatricia + OrrAnthony J. + HarrisJeffrey D. + + Age- and sex-specific survival of California sea lions (Zalophus californianus) at San Miguel Island, California + Marine Mammal Science + 2017 + 20180730 + 33 + 4 + 1748-7692 + https://onlinelibrary.wiley.com/doi/abs/10.1111/mms.12427 + 10.1111/mms.12427 + + + + + + HastingsKelly K. + SmallRobert J. + PendletonGrey W. + + Sex- and age-specific survival of harbor seals (Phoca vitulina) from Tugidak Island, Alaska + Journal of Mammalogy + 201210 + 20180727 + 93 + 5 + 0022-2372 + https://academic.oup.com/jmammal/article/93/5/1368/860838 + 10.1644/11-MAMM-A-291.1 + + + + + + PuntA. E. + MorenoPaula + BrandonJohn R + MathewsMichael A + + Conserving and recovering vulnerable marine species: A comprehensive evaluation of the US approach for marine mammals + ICES Journal of Marine Science + 201806 + 20180924 + 75 + 5 + 1054-3139 + https://academic.oup.com/icesjms/advance-article/doi/10.1093/icesjms/fsy049/5035891 + 10.1093/icesjms/fsy049 + + + + + + BreiwickJeffrey M. + EberhardtL. Lee + BrahamHoward W. + + Population Dynamics of Western Arctic Bowhead Whales ( Balaena mysticetus ) + Canadian Journal of Fisheries and Aquatic Sciences + 198403 + 20181106 + 41 + 3 + 0706-652X + http://www.nrcresearchpress.com/doi/10.1139/f84-058 + 10.1139/f84-058 + + + + + + ButterworthD. S. + PuntA. E. + OosthuizenW. H. + WickensP. A. + + The effects of future consumption by the Cape fur seal on catches and catch rates of the Cape hakes. 3. Modelling the dynamics of the Cape fur seal Arctocephalus pusillus pusillus + South African Journal of Marine Science + 199512 + 20181227 + 16 + 1 + 0257-7615 + https://doi.org/10.2989/025776195784156511 + 10.2989/025776195784156511 + + + + + + DillinghamPeter W. + MooreJeffrey E. + FletcherDavid + CortésEnric + CurtisK. Alexandra + JamesKelsey C. + LewisonRebecca L. + + Improved estimation of intrinsic growth rmax for long-lived species: Integrating matrix models and allometry + Ecological Applications + 2016 + 20190408 + 26 + 1 + 1939-5582 + https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1890/14-1990 + 10.1890/14-1990 + + + + + + Arso CivilMònica + CheneyBarbara + QuickNicola J. + Islas-VillanuevaValentina + GravesJeff A. + JanikVincent M. + ThompsonPaul M. + HammondPhilip S. + + Variations in age- and sex-specific survival rates help explain population trend in a discrete marine mammal population + Ecology and Evolution + 201901 + 20190628 + 9 + 1 + 20457758 + http://doi.wiley.com/10.1002/ece3.4772 + 10.1002/ece3.4772 + + + + + + ÓlafsdóttirDroplaug + VíkingssonGísli A. + HalldórssonSverrir Daníel + SigurjónssonJóhann + + Growth and reproduction in harbour porpoises (Phocoena phocoena) in Icelandic waters + NAMMCO Scientific Publications + 200307 + 20190713 + 5 + 2309-2491 + https://septentrio.uit.no/index.php/NAMMCOSP/article/view/2747 + 10.7557/3.2747 + + + + + + SpeakmanTodd R + LaneSuzanne M + SchwackeLori H + FairPatricia A + ZolmanEric S + + Mark-recapture estimates of seasonal abundance and survivorship for bottlenose dolphins (Tursiops truncatus) near Charleston, South Carolina, USA + 2010 + + + + + + MooreJ. E. + + Unpublished estimates following the methods of Dillingham et al. 2016. + 2019 + + + + + + WadePaul R. + LongKristy J. + FrancisTessa B. + PuntAndré E. + HammondPhilip S. + HeinemannDennis + MooreJeffrey E. + ReevesRandall R. + SepúlvedaMaritza + SullawayGenoa + SigurðssonGuðjón Már + SipleMargaret C. + VíkingssonGísli A. + WilliamsRob + ZerbiniAlexandre N. + + Best Practices for Assessing and Managing Bycatch of Marine Mammals + Frontiers in Marine Science + 2021 + 20220107 + 8 + 2296-7745 + https://www.frontiersin.org/article/10.3389/fmars.2021.757330 + 10.3389/fmars.2021.757330 + + + + + + MooreJeffrey E. + HeinemannDennis + FrancisTessa B. + HammondPhilip S. + LongKristy J. + PuntAndré E. + ReevesRandall R. + SepúlvedaMaritza + SigurðssonGuðjón Már + SipleMargaret C. + VíkingssonGísli A. + WadePaul R. + WilliamsRob + ZerbiniAlexandre N. + + Estimating Bycatch Mortality for Marine Mammals: Concepts and Best Practices + Frontiers in Marine Science + 2021 + 20220107 + 8 + 2296-7745 + https://www.frontiersin.org/article/10.3389/fmars.2021.752356 + 10.3389/fmars.2021.752356 + + + + + + HammondPhilip S. + FrancisTessa B. + HeinemannDennis + LongKristy J. + MooreJeffrey E. + PuntAndré E. + ReevesRandall R. + SepúlvedaMaritza + SigurðssonGuðjón Már + SipleMargaret C. + VíkingssonGísli + WadePaul R. + WilliamsRob + ZerbiniAlexandre N. + + Estimating the Abundance of Marine Mammal Populations + Frontiers in Marine Science + 2021 + 20211101 + 8 + 2296-7745 + https://www.frontiersin.org/article/10.3389/fmars.2021.735770 + 10.3389/fmars.2021.735770 + + + + + + R Core Team + + R: A language and environment for statistical computing + R Foundation for Statistical Computing + Vienna, Austria + 2021 + https://www.R-project.org/ + + + + + + ChangWinston + ChengJoe + AllaireJJ + SievertCarson + SchloerkeBarret + XieYihui + AllenJeff + McPhersonJonathan + DipertAlan + BorgesBarbara + + Shiny: Web application framework for R + 2021 + https://CRAN.R-project.org/package=shiny + + + + + +
diff --git a/joss.03888/10.21105.joss.03888.pdf b/joss.03888/10.21105.joss.03888.pdf new file mode 100644 index 0000000000..1fa4fd39f7 Binary files /dev/null and b/joss.03888/10.21105.joss.03888.pdf differ