From 3ae65040d553fc96e0778a0877434bcc91497280 Mon Sep 17 00:00:00 2001 From: jasmezz Date: Mon, 27 Feb 2023 11:31:38 +0100 Subject: [PATCH 1/4] version bump [skip ci] --- CHANGELOG.md | 6 +++--- nextflow.config | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index fded656c..bdbe0864 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,16 +3,16 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## v1.1.0dev [unreleased] +## v1.0.1 - [2023-02-27] ### `Added` -- Added pipeline citation DOI to `WorkflowMain.groovy` to display it when executing the pipeline +- Added pipeline citation DOI to `WorkflowMain.groovy` to display it when executing the pipeline. (by @jasmezz) ### `Fixed` - Removed a header check in the `check_samplesheet.py` script that was producing false negatives. Presence of required columns is still validated. (by @Midnighter) -- Improved database downloading guidance to emphasise it is recommended to let nf-core/funcscan do the downloading on a first run, rather than manually downloading yourself (reported by @alexhbnr, fixed by @jfy133) +- Improved database downloading guidance to emphasise it is recommended to let nf-core/funcscan do the downloading on a first run, rather than manually downloading yourself. (reported by @alexhbnr, fixed by @jfy133) ### `Dependencies` diff --git a/nextflow.config b/nextflow.config index d927c549..ce6f312f 100644 --- a/nextflow.config +++ b/nextflow.config @@ -344,7 +344,7 @@ manifest { description = """Pipeline for screening for functional components of assembled contigs""" mainScript = 'main.nf' nextflowVersion = '!>=22.10.1' - version = '1.1.0dev' + version = '1.0.1' doi = '10.5281/zenodo.7643099' } From 2e7fb49f45a479e72f8a4c48b6da0e58efb2aae2 Mon Sep 17 00:00:00 2001 From: jasmezz Date: Mon, 27 Feb 2023 11:37:24 +0100 Subject: [PATCH 2/4] Update changelog with links to PRs --- CHANGELOG.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index bdbe0864..741a1d04 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,12 +7,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Added` -- Added pipeline citation DOI to `WorkflowMain.groovy` to display it when executing the pipeline. (by @jasmezz) +- [#229](https://github.com/nf-core/funcscan/pull/229) Added pipeline citation DOI to `WorkflowMain.groovy` to display it when executing the pipeline. (by @jasmezz) ### `Fixed` -- Removed a header check in the `check_samplesheet.py` script that was producing false negatives. Presence of required columns is still validated. (by @Midnighter) -- Improved database downloading guidance to emphasise it is recommended to let nf-core/funcscan do the downloading on a first run, rather than manually downloading yourself. (reported by @alexhbnr, fixed by @jfy133) +- [#227](https://github.com/nf-core/funcscan/pull/227) Removed a header check in the `check_samplesheet.py` script that was producing false negatives. Presence of required columns is still validated. (by @Midnighter) +- [#228](https://github.com/nf-core/funcscan/pull/228) Improved database downloading guidance to emphasise it is recommended to let nf-core/funcscan do the downloading on a first run, rather than manually downloading yourself. (reported by @alexhbnr, fixed by @jfy133) ### `Dependencies` From c4f3fdded6454cd7b1838ce098b053ed47ab884a Mon Sep 17 00:00:00 2001 From: jasmezz Date: Mon, 27 Feb 2023 11:41:11 +0100 Subject: [PATCH 3/4] Update wording in changelog [skip ci] --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 741a1d04..05be2e94 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,7 +7,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Added` -- [#229](https://github.com/nf-core/funcscan/pull/229) Added pipeline citation DOI to `WorkflowMain.groovy` to display it when executing the pipeline. (by @jasmezz) +- [#229](https://github.com/nf-core/funcscan/pull/229) Added pipeline DOI to `WorkflowMain.groovy` to display citation info when executing the pipeline. (by @jasmezz) ### `Fixed` From 54042b8a5f653dabefbd0e2f76186e2ec78ea1fd Mon Sep 17 00:00:00 2001 From: jasmezz Date: Mon, 27 Feb 2023 11:43:10 +0100 Subject: [PATCH 4/4] Fix indentation [skip ci] --- nextflow.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nextflow.config b/nextflow.config index ce6f312f..3fbf9558 100644 --- a/nextflow.config +++ b/nextflow.config @@ -344,7 +344,7 @@ manifest { description = """Pipeline for screening for functional components of assembled contigs""" mainScript = 'main.nf' nextflowVersion = '!>=22.10.1' - version = '1.0.1' + version = '1.0.1' doi = '10.5281/zenodo.7643099' }